Structures

Coordinates and information about structures published from our laboratory, organized by year and paper in which they were reported:

 

 

 

2007

Mishra, PM, M. Wall, M. Socolich, J. Graves, ZF Wang, and R. Ranganathan (2007). Dynamic scaffolding in a G Protein coupled signaling system. Cell, 131:80-92 .
PDF, Supporting Information

Description
Method (res)
PDB code
InaD PDZ5, oxized state (0 DTT)
xray (2.05 A)
InaD PDZ5, oxidized and reduced states (10 mM DTT)
xray (2.2 A)
InaD PDZ5, C645S mutant (0 DTT)
xray (1.55 A)

 

Ferguson, A.D., C.A. Amezcua, N.M. Halabi, Y. Chelliah, M.K. Rosen, R. Ranganathan, J. Deisenhofer (2007). Signal Transduction Pathway of TonB-dependent Transporters. PNAS, 104: 513-518. PDF

Description
Method
PDB code
PupA periplasmic signaling domain
NMR
FecA periplasmic signaling domain
NMR

 

2005

Socolich, M., S.W. Lockless, H.L. Lee, K. Gardner, and R. Ranganathan (2005). Evolutionary Information for Specifying a Protein Fold. Nature, 437: 512-518., PDF, SI,

Description
Method
PDB code
Structure of CC45, a synthetic WW domain
NMR

 

2004

Jain, R.K., and R. Ranganathan (2003). Local Complexity of Amino-acid Interactions in a Protein Core. PNAS, 101(1): 111-116. PDF

Description
Method (res)
PDB code
wild-type EGFP (S65T Q80R), pH 8.5
xray (1.45 A)
wild-type EGFP (S65T Q80R), pH 5.5
xray (1.48 A)
T203C EGFP (S65T Q80R), pH 8.5
xray (1.55 A)
T203C EGFP (S65T Q80R), pH 5.5
xray (1.58 A)
Y145C EGFP (S65T Q80R), pH 8.5
xray (1.38 A)
Y145C,T203C EGFP (S65T Q80R), pH 8.5
xray (1.6 A)

 

2000

Wall, M.A., M. Socolich, and R. Ranganathan (2000). The Structural Basis for Red Fluorescence in dsRED, a Tetrameric Green Fluorescent Protein Homolog. Nature Structural Biology, 7: 1133-1138. PDF

Description
Method (res)
PDB code
DsRED, the red fluorescent protein from Discosoma sp.
xray (1.9 A)

 

1997

Ranganathan, R., K.P. Lu, T. Hunter, and J.P. Noel (1997). Structural and Functional Analysis of the Mitotic Rotamase Pin1 Suggests Substrate Recognition is Phosphorylation Dependent. Cell, 89: 875-886. PDF

Description
Method (res)
PDB code
Pin1 peptidyl-prolyl cis-trans isomerase (H. sapiens)
xray (1.35 A)